Thanks to Chris Jester-Young I managed to make it work!
I think the way I managed to do it will work only on really simple projects:
- With Dex2jar I obtained the Jar.
- With jd-gui I convert my Jar back to Java files.
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With apktool i got the android manifest and the resources files.
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In Eclipse I create a new project with the same settings as the old one (checking all the information in the manifest file)
- When the project is created I’m replacing all the resources and the manifest with the ones I obtained with apktool
- I paste the java files I extracted from the Jar in the src folder (respecting the packages)
- I modify those files with what I need
- Everything is compiling!
/!\ be sure you removed the old apk from the device an error will be thrown stating that the apk signature is not the same as the old one!