How to parse complex text files using Python?

Update 2019 (PEG parser):

This answer has received quite some attention so I felt to add another possibility, namely a parsing option. Here we could use a PEG parser instead (e.g. parsimonious) in combination with a NodeVisitor class:

from parsimonious.grammar import Grammar
from parsimonious.nodes import NodeVisitor
import pandas as pd
grammar = Grammar(
    r"""
    schools         = (school_block / ws)+

    school_block    = school_header ws grade_block+ 
    grade_block     = grade_header ws name_header ws (number_name)+ ws score_header ws (number_score)+ ws? 

    school_header   = ~"^School = (.*)"m
    grade_header    = ~"^Grade = (\d+)"m
    name_header     = "Student number, Name"
    score_header    = "Student number, Score"

    number_name     = index comma name ws
    number_score    = index comma score ws

    comma           = ws? "," ws?

    index           = number+
    score           = number+

    number          = ~"\d+"
    name            = ~"[A-Z]\w+"
    ws              = ~"\s*"
    """
)

tree = grammar.parse(data)

class SchoolVisitor(NodeVisitor):
    output, names = ([], [])
    current_school, current_grade = None, None

    def _getName(self, idx):
        for index, name in self.names:
            if index == idx:
                return name

    def generic_visit(self, node, visited_children):
        return node.text or visited_children

    def visit_school_header(self, node, children):
        self.current_school = node.match.group(1)

    def visit_grade_header(self, node, children):
        self.current_grade = node.match.group(1)
        self.names = []

    def visit_number_name(self, node, children):
        index, name = None, None
        for child in node.children:
            if child.expr.name == 'name':
                name = child.text
            elif child.expr.name == 'index':
                index = child.text

        self.names.append((index, name))

    def visit_number_score(self, node, children):
        index, score = None, None
        for child in node.children:
            if child.expr.name == 'index':
                index = child.text
            elif child.expr.name == 'score':
                score = child.text

        name = self._getName(index)

        # build the entire entry
        entry = (self.current_school, self.current_grade, index, name, score)
        self.output.append(entry)

sv = SchoolVisitor()
sv.visit(tree)

df = pd.DataFrame.from_records(sv.output, columns = ['School', 'Grade', 'Student number', 'Name', 'Score'])
print(df)

Regex option (original answer)

Well then, watching Lord of the Rings the xth time, I had to bridge some time to the very finale:


Broken down, the idea is to split the problem up into several smaller problems:

  1. Separate each school
  2. … each grade
  3. … student and scores
  4. … bind them together in a dataframe afterwards

The school part (see a demo on regex101.com)

^
School\s*=\s*(?P<school_name>.+)
(?P<school_content>[\s\S]+?)
(?=^School|\Z)


The grade part (another demo on regex101.com)

^
Grade\s*=\s*(?P<grade>.+)
(?P<students>[\s\S]+?)
(?=^Grade|\Z)


The student/score part (last demo on regex101.com):

^
Student\ number,\ Name[\n\r]
(?P<student_names>(?:^\d+.+[\n\r])+)
\s*
^
Student\ number,\ Score[\n\r]
(?P<student_scores>(?:^\d+.+[\n\r])+)

The rest is a generator expression which is then fed into the DataFrame constructor (along with the column names).


The code:

import pandas as pd, re

rx_school = re.compile(r'''
    ^
    School\s*=\s*(?P<school_name>.+)
    (?P<school_content>[\s\S]+?)
    (?=^School|\Z)
''', re.MULTILINE | re.VERBOSE)

rx_grade = re.compile(r'''
    ^
    Grade\s*=\s*(?P<grade>.+)
    (?P<students>[\s\S]+?)
    (?=^Grade|\Z)
''', re.MULTILINE | re.VERBOSE)

rx_student_score = re.compile(r'''
    ^
    Student\ number,\ Name[\n\r]
    (?P<student_names>(?:^\d+.+[\n\r])+)
    \s*
    ^
    Student\ number,\ Score[\n\r]
    (?P<student_scores>(?:^\d+.+[\n\r])+)
''', re.MULTILINE | re.VERBOSE)


result = ((school.group('school_name'), grade.group('grade'), student_number, name, score)
    for school in rx_school.finditer(string)
    for grade in rx_grade.finditer(school.group('school_content'))
    for student_score in rx_student_score.finditer(grade.group('students'))
    for student in zip(student_score.group('student_names')[:-1].split("\n"), student_score.group('student_scores')[:-1].split("\n"))
    for student_number in [student[0].split(", ")[0]]
    for name in [student[0].split(", ")[1]]
    for score in [student[1].split(", ")[1]]
)

df = pd.DataFrame(result, columns = ['School', 'Grade', 'Student number', 'Name', 'Score'])
print(df)


Condensed:

rx_school = re.compile(r'^School\s*=\s*(?P<school_name>.+)(?P<school_content>[\s\S]+?)(?=^School|\Z)', re.MULTILINE)
rx_grade = re.compile(r'^Grade\s*=\s*(?P<grade>.+)(?P<students>[\s\S]+?)(?=^Grade|\Z)', re.MULTILINE)
rx_student_score = re.compile(r'^Student number, Name[\n\r](?P<student_names>(?:^\d+.+[\n\r])+)\s*^Student number, Score[\n\r](?P<student_scores>(?:^\d+.+[\n\r])+)', re.MULTILINE)


This yields

            School Grade Student number      Name Score
0   Riverdale High     1              0    Phoebe     3
1   Riverdale High     1              1    Rachel     7
2   Riverdale High     2              0    Angela     6
3   Riverdale High     2              1   Tristan     3
4   Riverdale High     2              2    Aurora     9
5         Hogwarts     1              0     Ginny     8
6         Hogwarts     1              1      Luna     7
7         Hogwarts     2              0     Harry     5
8         Hogwarts     2              1  Hermione    10
9         Hogwarts     3              0      Fred     0
10        Hogwarts     3              1    George     0


As for timing, this is the result running it a ten thousand times:

import timeit
print(timeit.timeit(makedf, number=10**4))
# 11.918397722000009 s

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