How to properly stop the Thread in Java?

Using Thread.interrupt() is a perfectly acceptable way of doing this. In fact, it’s probably preferrable to a flag as suggested above. The reason being that if you’re in an interruptable blocking call (like Thread.sleep or using java.nio Channel operations), you’ll actually be able to break out of those right away.

If you use a flag, you have to wait for the blocking operation to finish and then you can check your flag. In some cases you have to do this anyway, such as using standard InputStream/OutputStream which are not interruptable.

In that case, when a thread is interrupted, it will not interrupt the IO, however, you can easily do this routinely in your code (and you should do this at strategic points where you can safely stop and cleanup)

if (Thread.currentThread().isInterrupted()) {
  // cleanup and stop execution
  // for example a break in a loop
}

Like I said, the main advantage to Thread.interrupt() is that you can immediately break out of interruptable calls, which you can’t do with the flag approach.

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