Have a look at Capture Autofilter state
To prevent link rot, here is the code (credit to original author):
Works with Excel 2010, just delete the commented line marked.
Sub ReDoAutoFilter()
Dim w As Worksheet
Dim filterArray()
Dim currentFiltRange As String
Dim col As Integer
Set w = ActiveSheet
' Capture AutoFilter settings
With w.AutoFilter
currentFiltRange = .Range.Address
With .Filters
ReDim filterArray(1 To .Count, 1 To 3)
For f = 1 To .Count
With .Item(f)
If .On Then
filterArray(f, 1) = .Criteria1
If .Operator Then
filterArray(f, 2) = .Operator
filterArray(f, 3) = .Criteria2 'simply delete this line to make it work in Excel 2010
End If
End If
End With
Next f
End With
End With
'Remove AutoFilter
w.AutoFilterMode = False
' Your code here
' Restore Filter settings
For col = 1 To UBound(filterArray(), 1)
If Not IsEmpty(filterArray(col, 1)) Then
If filterArray(col, 2) Then
w.Range(currentFiltRange).AutoFilter field:=col, _
Criteria1:=filterArray(col, 1), _
Operator:=filterArray(col, 2), _
Criteria2:=filterArray(col, 3)
Else
w.Range(currentFiltRange).AutoFilter field:=col, _
Criteria1:=filterArray(col, 1)
End If
End If
Next col
End Sub