Issue with adding common code as git submodule: “already exists in the index”

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I’m afraid there’s not enough information in your question to be certain about what’s going on, since you haven’t replied to my follow-up question, but this may be of help in any case.

That error means that projectfolder is already staged (“already exists in the index”). To find out what’s going on here, try to list everything in the index under that folder with:

git ls-files --stage projectfolder

The first column of that output will tell you what type of object is in the index at projectfolder. (These look like Unix filemodes, but have special meanings in git.)

I suspect that you will see something like:

160000 d00cf29f23627fc54eb992dde6a79112677cd86c 0   projectfolder

(i.e. a line beginning with 160000), in which case the repository in projectfolder has already been added as a “gitlink”. If it doesn’t appear in the output of git submodule, and you want to re-add it as a submodule, you can do:

git rm --cached projectfolder

… to unstage it, and then:

git submodule add url_to_repo projectfolder

… to add the repository as a submodule.

However, it’s also possible that you will see many blobs listed (with file modes 100644 and 100755), which would suggest to me that you didn’t properly unstage the files in projectfolder before copying the new repository into place. If that’s the case, you can do the following to unstage all of those files:

git rm -r --cached projectfolder

… and then add the submodule with:

git submodule add url_to_repo projectfolder

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