Java scanner not going through entire file

There’s a problem with Scanner reading your file but I’m not sure what it is. It mistakenly believes that it’s reached the end of file when it has not, possibly due to some funky String encoding. Try using a BufferedReader object that wraps a FileReader object instead.

e.g.,

   private static Set<String> posible2(String posLoc) {
      Set<String> result = new TreeSet<String>();
      BufferedReader br = null;
      try {
         br = new BufferedReader(new FileReader(new File(posLoc)));
         String availalbe;
         while((availalbe = br.readLine()) != null) {
             result.add(availalbe);            
         }
      } catch (FileNotFoundException e) {
         e.printStackTrace();
      } catch (IOException e) {
         e.printStackTrace();
      } finally {
         if (br != null) {
            try {
               br.close();
            } catch (IOException e) {
               e.printStackTrace();
            }
         }
      }
      return result;
  }

Edit
I tried reducing your problem to its bare minimum, and just this was enough to elicit the problem:

   public static void main(String[] args) {
      try {
         Scanner scanner = new Scanner(new File(FILE_POS));
         int count = 0;
         while (scanner.hasNextLine()) {
            String line = scanner.nextLine();
            System.out.printf("%3d: %s %n", count, line );
            count++;
         }

I checked the Scanner object with a printf:

System.out.printf("Str: %-35s size%5d; Has next line? %b%n", availalbe, result.size(), s.hasNextLine());

and showed that it thought that the file had ended. I was in the process of progressively deleting lines from the data to file to see which line(s) caused the problem, but will leave that to you.