Use a pushdown automaton for matching paranthesis http://en.wikipedia.org/wiki/Pushdown_automaton (or just a stack 😉 )
Details for the stack solution:
while (chr available)
if chr == '(' then
push '('
else
if chr == ')' then
if stack.elements == 0 then
print('too many or misplaced )')
exit
else
pop //from stack
end while
if (stack.elements != 0)
print('too many or misplaced(')
Even simple: just keep a counter instead of stack.