Use custom Manifest file and permission in Unity?

You are modifying the wrong AndroidManifest file. That AndroidManifest from <ProjectName>\Temp\StagingArea you are modifying is generated by unity each time you build your project.

To use a custom AndroidManifest file, you have to put your custom AndroidManifest file at <ProjectName>Assets\Plugins\Android.

1.Go to <UnityInstallationDirecory>\Editor\Data\PlaybackEngines\AndroidPlayer\Apk, Copy the AndroidManifest.xml file to your <ProjectName>Assets\Plugins\Android

2.Open the copied Manifest file from <ProjectName>Assets\Plugins\Android and add your manifest.

In your particular case, add <application android:theme="Theme.Light.NoTitleBar" android:icon="@drawable/app_icon" android:label="@string/app_name" android:debuggable="false" android:isGame="true" android:banner="@drawable/app_banner"> to it. Save, Build and Run.

Unity will now use that AndroidManifest file. If you get crash or any other problem, then Unity does not want you to change that.

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