dplyr: how to reference columns by column index rather than column name using mutate?

You can try:

iris %>% head %>% mutate(sum = .[[1]] + .[[2]])

  Sepal.Length Sepal.Width Petal.Length Petal.Width Species sum
1          5.1         3.5          1.4         0.2  setosa 8.6
2          4.9         3.0          1.4         0.2  setosa 7.9
3          4.7         3.2          1.3         0.2  setosa 7.9
4          4.6         3.1          1.5         0.2  setosa 7.7
5          5.0         3.6          1.4         0.2  setosa 8.6
6          5.4         3.9          1.7         0.4  setosa 9.3

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