Some RewriteRule should handle that quite well.
In a Drupal configuration file I found:
# AddEncoding allows you to have certain browsers uncompress information on the fly.
AddEncoding gzip .gz
#Serve gzip compressed CSS files if they exist and the client accepts gzip.
RewriteCond %{HTTP:Accept-encoding} gzip
RewriteCond %{REQUEST_FILENAME}\.gz -s
RewriteRule ^(.*)\.css $1\.css\.gz [QSA]
# Serve gzip compressed JS files if they exist and the client accepts gzip.
RewriteCond %{HTTP:Accept-encoding} gzip
RewriteCond %{REQUEST_FILENAME}\.gz -s
RewriteRule ^(.*)\.js $1\.js\.gz [QSA]
# Serve correct content types, and prevent mod_deflate double gzip.
RewriteRule \.css\.gz$ - [T=text/css,E=no-gzip:1]
RewriteRule \.js\.gz$ - [T=text/javascript,E=no-gzip:1]
This will make the job. You can put that either in a <Directory foo/>
section or in a .htaccess file if you do not have access to apache configuration or if you want to slowdown your webserver.