readarray -d '' entries < <(printf '%s\0' *.fas | sort -zV)
for entry in "${entries[@]}"; do
# do something with $entry
done
where printf '%s\0' *.fas
yields a NUL separated list of directory entries with the extension .fas
, and sort -zV
sorts them in natural order.
Note that you need GNU sort installed in order for this to work.