List all the files from all the folders in a single list

Try this:

 .....
 List<File> files = getListFiles(new File("YOUR ROOT"));
 ....
 private List<File> getListFiles(File parentDir) {
    ArrayList<File> inFiles = new ArrayList<File>();
    File[] files = parentDir.listFiles();
    for (File file : files) {
        if (file.isDirectory()) {
            inFiles.addAll(getListFiles(file));
        } else {
            if(file.getName().endsWith(".csv")) {
                inFiles.add(file);
            }
        }
    }
    return inFiles;
}

Or a variant without recursion:

private List<File> getListFiles2(File parentDir) {
    List<File> inFiles = new ArrayList<>();
    Queue<File> files = new LinkedList<>();
    files.addAll(Arrays.asList(parentDir.listFiles()));
    while (!files.isEmpty()) {
        File file = files.remove();
        if (file.isDirectory()) {
            files.addAll(Arrays.asList(file.listFiles()));
        } else if (file.getName().endsWith(".csv")) {
            inFiles.add(file);
        }
    }
    return inFiles;
}