I created a sample of an animated clock in an undecorated window which you can drag around.
Relevant code from the sample is:
// allow the clock background to be used to drag the clock around.
final Delta dragDelta = new Delta();
layout.setOnMousePressed(new EventHandler<MouseEvent>() {
@Override public void handle(MouseEvent mouseEvent) {
// record a delta distance for the drag and drop operation.
dragDelta.x = stage.getX() - mouseEvent.getScreenX();
dragDelta.y = stage.getY() - mouseEvent.getScreenY();
}
});
layout.setOnMouseDragged(new EventHandler<MouseEvent>() {
@Override public void handle(MouseEvent mouseEvent) {
stage.setX(mouseEvent.getScreenX() + dragDelta.x);
stage.setY(mouseEvent.getScreenY() + dragDelta.y);
}
});
...
// records relative x and y co-ordinates.
class Delta { double x, y; }
Code looks pretty similar to yours, so not quite sure why your code is not working for you.