This section of the manual might interest you : 11.8.6. Fine-Tuning MySQL Full-Text Search (quoting a portion of it) :
The minimum and maximum lengths of
words to be indexed are defined by the
ft_min_word_len
andft_max_word_len
system variables. The
default minimum value is four
characters; the default maximum is
version dependent. If you change
either value, you must rebuild your
FULLTEXT indexes.
For example, if you
want three-character words to be
searchable, you can set the
ft_min_word_len
variable by putting
the following lines in an option file:[mysqld] ft_min_word_len=3
Then you must restart the server and
rebuild your FULLTEXT indexes.
(You should read that page, for more informations I didn’t copy-paste 😉 )