Pitch is not the same as peak magnitude frequency bin (which is what the FFT in the Accelerate framework might give you directly). So any peak frequency detector will not be reliable for pitch estimation. A low-pass filter will not help when the note has a missing or very weak fundamental (common in some voice, piano and guitar sounds) and/or lots of powerful overtones in its spectrum.
Look at a wide-band spectrum or spectrograph of your musical sounds and you will see the problem.
Other methods are usually needed for a more reliable estimate of musical pitch. Some of these include autocorrelation methods (AMDF, ASDF), Cepstrum/Cepstral analysis, harmonic product spectrum, phase vocoder, and/or composite algorithms such as RAPT (Robust Algorithm for Pitch Tracking) and YAAPT. An FFT is useful as only a sub-part of some of the above methods.